BTE0016 Applications of bioinformatics-II

6 ECTS - 3-2 Duration (T+A)- . Semester- 4 National Credit

Information

Code BTE0016
Name Applications of bioinformatics-II
Term 2024-2025 Academic Year
Semester . Semester
Duration (T+A) 3-2 (T-A) (17 Week)
ECTS 6 ECTS
National Credit 4 National Credit
Teaching Language İngilizce
Level Doktora Dersi
Type Normal
Mode of study Yüz Yüze Öğretim
Catalog Information Coordinator


Course Goal / Objective

Main purpose of this course is to give students an insight on bioinformatics utilization in molecular genetic testing

Course Content

This course is the follow-up of Applications of Bioinformatics - I and includes next generation sequening data processing, analyzing and choosing the right bioinformatics tool.

Course Precondition

none

Resources

Bioinformtics related on Articles

Notes

Bioinformtics related on Articles/Books


Course Learning Outcomes

Order Course Learning Outcomes
LO01 Having information about Next Generation Sequencing method
LO02 Having information about Next Generation Sequencing systems
LO03 Having information about Next Generation Sequencing data evaluation
LO04 Having information about bioinformatics analysis of DNA and RNA based genetic changes
LO05 Having information about NGS data quality controls
LO06 Having information about databases and in-silico analysis tools
LO07 Having information about NGS workflow.
LO08 Having information about used biological materials in Next Generation Sequencing systems


Relation with Program Learning Outcome

Order Type Program Learning Outcomes Level
PLO01 Bilgi - Kuramsal, Olgusal Develop and deepen the current and advanced knowledge in the field with original thought and / or research at the level of expertise based on the qualifications of the graduate and reach the original definitions that will bring innovation to the field. 4
PLO02 Bilgi - Kuramsal, Olgusal Understands the interdisciplinary interaction of the field; it achieves original results using knowledge requiring expertise in analysis, synthesis and evaluation of new and complex ideas. 3
PLO03 Beceriler - Bilişsel, Uygulamalı Evaluates, uses and transfers new information in the field with a systematic approach.
PLO04 Beceriler - Bilişsel, Uygulamalı Makes critical analysis, synthesis and evaluation of new and complex thoughts. 1
PLO05 Yetkinlikler - Bağımsız Çalışabilme ve Sorumluluk Alabilme Yetkinliği Makes leadership in environments that require the analysis of original and interdisciplinary problems.
PLO06 Yetkinlikler - Bağımsız Çalışabilme ve Sorumluluk Alabilme Yetkinliği It extends the limits of knowledge in its field by publishing at least one scientific article in its field in national and / or international refereed journals and / or producing or interpreting an original work.
PLO07 Yetkinlikler - Öğrenme Yetkinliği Develops new ideas and methods related to the field by using high level mental processes such as creative and critical thinking, problem solving and decision making.
PLO08 Yetkinlikler - İletişim ve Sosyal Yetkinlik He / she defends his / her original opinions in discussing the subjects in his / her field and establishes an effective communication showing his / her competence in the field.
PLO09 Yetkinlikler - Alana Özgü Yetkinlik Conducts scientific research in national and international scientific research groups.
PLO10 Yetkinlikler - Alana Özgü Yetkinlik Establishes functional interaction by using strategic decision making processes in solving problems encountered in the field. 1


Week Plan

Week Topic Preparation Methods
1 Setting Up Trio Analysis No need for preliminary preparation Öğretim Yöntemleri:
Gösteri, Deney / Laboratuvar
2 Analysis of Hereditary Workflows No need for preliminary preparation Öğretim Yöntemleri:
Gösteri, Deney / Laboratuvar
3 Analysis of Somatic Workflows - 1: Fresh Samples to FFPE Samples No need for preliminary preparation Öğretim Yöntemleri:
Gösteri, Deney / Laboratuvar
4 Analysis of Somatic Workflows - 2: Circulating cell-free DNA No need for preliminary preparation Öğretim Yöntemleri:
Gösteri, Deney / Laboratuvar
5 Filtering Whole Exome Data No need for preliminary preparation Öğretim Yöntemleri:
Gösteri, Deney / Laboratuvar
6 Filtering Whole Genome Data-2 No need for preliminary preparation Öğretim Yöntemleri:
Anlatım, Gösteri, Deney / Laboratuvar
7 NGS and Databases in Clinical Diagnostics No need for preliminary preparation Öğretim Yöntemleri:
Anlatım, Gösteri, Deney / Laboratuvar
8 Mid-Term Exam No need for preliminary preparation Ölçme Yöntemleri:
Performans Değerlendirmesi
9 Legal Issues for Data Storage No need for preliminary preparation Öğretim Yöntemleri:
Anlatım
10 Law on the Protection of Personal Data No need for preliminary preparation Öğretim Yöntemleri:
Anlatım, Soru-Cevap, Tartışma
11 Students' presentation No need for preliminary preparation Öğretim Yöntemleri:
Anlatım
12 Students' presentation-2 No need for preliminary preparation Öğretim Yöntemleri:
Anlatım
13 Students' presentation-3 No need for preliminary preparation Öğretim Yöntemleri:
Anlatım
14 Data Mining No need for preliminary preparation Öğretim Yöntemleri:
Anlatım
15 Clinical reporting No need for preliminary preparation Öğretim Yöntemleri:
Anlatım, Gösteri
16 Term Exams No need for preliminary preparation Ölçme Yöntemleri:
Ödev
17 Term Exams No need for preliminary preparation Ölçme Yöntemleri:
Ödev


Student Workload - ECTS

Works Number Time (Hour) Workload (Hour)
Course Related Works
Class Time (Exam weeks are excluded) 14 5 70
Out of Class Study (Preliminary Work, Practice) 14 5 70
Assesment Related Works
Homeworks, Projects, Others 0 0 0
Mid-term Exams (Written, Oral, etc.) 1 5 5
Final Exam 1 15 15
Total Workload (Hour) 160
Total Workload / 25 (h) 6,40
ECTS 6 ECTS

Update Time: 14.05.2024 05:06