BTE0015 Applications of bioinformatics-I

6 ECTS - 3-2 Duration (T+A)- . Semester- 4 National Credit

Information

Code BTE0015
Name Applications of bioinformatics-I
Term 2024-2025 Academic Year
Semester . Semester
Duration (T+A) 3-2 (T-A) (17 Week)
ECTS 6 ECTS
National Credit 4 National Credit
Teaching Language İngilizce
Level Doktora Dersi
Type Normal
Mode of study Yüz Yüze Öğretim
Catalog Information Coordinator


Course Goal / Objective

Main purpose of this course is to give students an insight on bioinformatics utilization in molecular genetic testing

Course Content

In this course, genetic changes on nucleic acids will be analyzed and the effects of this mutations on protein level will be examined in the light of bioinformatic tools and databases.

Course Precondition

none

Resources

Bioinformtics related on Articles

Notes

Bioinformtics related on Articles/Books


Course Learning Outcomes

Order Course Learning Outcomes
LO01 Having an information about bioinformatics
LO02 Having an information about bioinformatics application fields
LO03 Understangind the relation between molecular genetic testing and bioinformatics
LO04 Recognition of bioinformatics tools and databases
LO05 Being able to evaluate variants


Relation with Program Learning Outcome

Order Type Program Learning Outcomes Level
PLO01 Bilgi - Kuramsal, Olgusal Develop and deepen the current and advanced knowledge in the field with original thought and / or research at the level of expertise based on the qualifications of the graduate and reach the original definitions that will bring innovation to the field. 4
PLO02 Bilgi - Kuramsal, Olgusal Understands the interdisciplinary interaction of the field; it achieves original results using knowledge requiring expertise in analysis, synthesis and evaluation of new and complex ideas.
PLO03 Beceriler - Bilişsel, Uygulamalı Evaluates, uses and transfers new information in the field with a systematic approach. 3
PLO04 Beceriler - Bilişsel, Uygulamalı Makes critical analysis, synthesis and evaluation of new and complex thoughts. 3
PLO05 Yetkinlikler - Bağımsız Çalışabilme ve Sorumluluk Alabilme Yetkinliği Makes leadership in environments that require the analysis of original and interdisciplinary problems.
PLO06 Yetkinlikler - Bağımsız Çalışabilme ve Sorumluluk Alabilme Yetkinliği It extends the limits of knowledge in its field by publishing at least one scientific article in its field in national and / or international refereed journals and / or producing or interpreting an original work.
PLO07 Yetkinlikler - Öğrenme Yetkinliği Develops new ideas and methods related to the field by using high level mental processes such as creative and critical thinking, problem solving and decision making.
PLO08 Yetkinlikler - İletişim ve Sosyal Yetkinlik He / she defends his / her original opinions in discussing the subjects in his / her field and establishes an effective communication showing his / her competence in the field.
PLO09 Yetkinlikler - Alana Özgü Yetkinlik Conducts scientific research in national and international scientific research groups.
PLO10 Yetkinlikler - Alana Özgü Yetkinlik Establishes functional interaction by using strategic decision making processes in solving problems encountered in the field.


Week Plan

Week Topic Preparation Methods
1 Introduction to bioinformatics No need for preliminary preparation Öğretim Yöntemleri:
Anlatım
2 Basics of clinical applications of bioinformatics No need for preliminary preparation Öğretim Yöntemleri:
Anlatım
3 Bioinformatics in molecular genetics No need for preliminary preparation Öğretim Yöntemleri:
Anlatım
4 Overview of the bioinformatics solutions on the medical market No need for preliminary preparation Öğretim Yöntemleri:
Anlatım, Soru-Cevap, Tartışma
5 Bioinformatics in sequencing No need for preliminary preparation Öğretim Yöntemleri:
Anlatım, Tartışma
6 Introduction to Next Generation Sequencing No need for preliminary preparation Öğretim Yöntemleri:
Anlatım, Gösteri, Deney / Laboratuvar
7 Next Generation Sequencing systems No need for preliminary preparation Öğretim Yöntemleri:
Anlatım, Alıştırma ve Uygulama, Deney / Laboratuvar
8 Mid-Term Exam No need for preliminary preparation Ölçme Yöntemleri:
Ödev
9 Next Generation Sequencing application No need for preliminary preparation Öğretim Yöntemleri:
Anlatım, Alıştırma ve Uygulama
10 Setting Up Your NGS Analysis Pipeline No need for preliminary preparation Öğretim Yöntemleri:
Anlatım, Alıştırma ve Uygulama, Gösterip Yaptırma
11 Quality Assessment of NGS Data No need for preliminary preparation Öğretim Yöntemleri:
Anlatım, Alıştırma ve Uygulama
12 Bioinformatics Application 1 No need for preliminary preparation Öğretim Yöntemleri:
Alıştırma ve Uygulama, Gösterip Yaptırma
13 Bioinformatics Application 2 No need for preliminary preparation Öğretim Yöntemleri:
Alıştırma ve Uygulama, Gösterip Yaptırma
14 The tools, databases and guidelines required for variant interpretation No need for preliminary preparation Öğretim Yöntemleri:
Anlatım
15 The tools, databases and guidelines required for variant interpretation-2 No need for preliminary preparation Öğretim Yöntemleri:
Anlatım
16 Term Exams No need for preliminary preparation Ölçme Yöntemleri:
Ödev
17 Term Exams No need for preliminary preparation Ölçme Yöntemleri:
Ödev


Student Workload - ECTS

Works Number Time (Hour) Workload (Hour)
Course Related Works
Class Time (Exam weeks are excluded) 14 5 70
Out of Class Study (Preliminary Work, Practice) 14 5 70
Assesment Related Works
Homeworks, Projects, Others 0 0 0
Mid-term Exams (Written, Oral, etc.) 1 5 5
Final Exam 1 15 15
Total Workload (Hour) 160
Total Workload / 25 (h) 6,40
ECTS 6 ECTS

Update Time: 14.05.2024 05:06